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update release branch to v2.8
[jalview.git]
/
help
/
html
/
menus
/
alignmentMenu.html
diff --git
a/help/html/menus/alignmentMenu.html
b/help/html/menus/alignmentMenu.html
index
6a5ec9f
..
eb51c62
100755
(executable)
--- a/
help/html/menus/alignmentMenu.html
+++ b/
help/html/menus/alignmentMenu.html
@@
-1,7
+1,7
@@
<html>
<!--
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
<html>
<!--
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-287,9
+287,13
@@
<li><strong>Show Consensus Histogram<br> </strong><em>
Enable or disable the display of the histogram above the
consensus sequence.</em></li>
<li><strong>Show Consensus Histogram<br> </strong><em>
Enable or disable the display of the histogram above the
consensus sequence.</em></li>
- <li><strong>Show Consensus Profile<br> </strong><em> Enable
- or disable the display of the sequence logo above the consensus
+ <li><strong>Show Consensus Logo<br> </strong><em> Enable
+ or disable the display of the Consensus Logo above the consensus
sequence.</em></li>
sequence.</em></li>
+ <li><strong>Normalise Consensus Logo<br>
+ </strong><em>When enabled, scales all logo stacks to the same height,
+ making it easier to compare symbol diversity in highly variable
+ regions.</em></li>
<li><strong>Group Conservation<br> </strong><em> When
ticked, display a conservation row for all groups (only available
for protein alignments).</em></li>
<li><strong>Group Conservation<br> </strong><em> When
ticked, display a conservation row for all groups (only available
for protein alignments).</em></li>