- <em>Saves all currently open alignment windows with their current visible \r
- settings as a Jalview File, with the .jar extension. Each alignment will \r
- also save the currently active tree associated with the window, if one \r
- exists. </em></li>\r
+ <em>Saves all currently open alignment windows with their current view \r
+ settings and any associated trees, as a <a href="../features/jalarchive.html">Jalview Archive</a> (which has a .jar extension).</em></li>\r