- <li><strong>New UI, and faster and more configurable implementation for PCA, Neighbour-Joining and UPGMA Trees</strong><br>
- Menu entries for calculating PCA and different types of tree have
- been replaced by a single <em>Calculations</em> dialog box. The
- underlying implementation for the PCA and tree calculations have been
- made faster and more memory efficient. A new framework has also been
- created for the score models used to calculate distances between
- sequences. This framework allows import of substitution matrices in
- NCBI and AAIndex format, and custom score models to be created via a
- groovy script.</li>
- <li><strong>Update to JABAWS 2.2</strong><br />Jalview's
- alignment, protein conservation analysis, and protein disorder and
- RNA secondary structure prediction services are now provided by <a
- href="http://www.compbio.dundee.ac.uk/jabaws">JABAWS 2.2</a>.
- Several of the programs provided as services have been updated, so
- their options and parameters have changed.</li>
- <li>New preferences for <a href="webServices/urllinks.html">opening
- web pages for database cross-references</a> via the UK Elixir's
- EMBL-EBI's MIRIAM database and identifiers.org services.
+ <li>EPS, PNG and SVG export now includes hidden sequence
+ markers, and representative sequences are marked in bold.</li>
+ <li>Ensembl Client updated for Ensembl Rest API v7.<br />The
+ latest Ensembl API is not backwards compatible with earlier
+ versions of Jalview, so if you require Ensembl functionality you
+ will need to install this release.