+<p><strong>Issues Resolved (a select list)</strong></p>
+<ul>
+ Aligned cDNA translation to aligned peptide works correctly<br>
+ selected region output includes visible annotations (for
+ certain formats)<br>
+ edit label/displaychar contains existing label/char for
+ editing<br>
+ Newick tree support improved for clustalW trees and preserving NHX style comments<br>
+ Pathological filechooser bug avoided by not allowing
+ filenames containing a ':'<br>
+ Fixed exception when parsing GFF files containing global
+ sequence features<br>
+ Reference counting for alignment datasets<br>
+ better reporting of non-fatal warnings and error messages to user when file
+ parsing fails.<br>
+ Save works when Jalview project is default format<br>
+ Histidine should be midblue (not pink!) in Zappo<br>
+ Undo recovers dataset sequence metadata when sequence
+ regions are cut<br>
+ PDB files without pdb ID HEADER lines (like those
+ generated by MODELLER) are read in properly<br>
+ Stockholm annotation parsing fixed and improved (PFAM records)<br>
+ Re-instated Full AMSA support and .amsa file association (MyHits)<br>
+ annotation consisting of sequence associated scores can be
+ read and written correctly to annotation file<br>
+ Fixed display of hidden sequence markers and non-italic font
+ for representatives in Applet<br>
+ Applet Menus are always embedded in applet window on Macs.</br>
+ Newly shown features appear at top of stack (in Applet)</br>
+ Secondary structure lines are drawn starting from first
+ column of alignment<br>
+ Uniprot XML import updated for new schema release in July 2008<br>
+ Sequence feature to sequence ID match for Features file is case-insensitive<br>
+ Sequence features read from Features file appended to all sequences with matching IDs<br>
+ PDB structure coloured correctly for associated views containing a sub-sequence<br>
+ Display name and local features preserved in results retrieved from web service<br>
+ Visual delay indication for sequence retrieval and sequence fetcher initialisation<br>
+ Updated Application to use DAS 1.53e version of dasobert DAS client
+</ul>
+
+<p> </p>
+<p>See the <a href="releases.html">Release History</a> page for
+details of all new features and resolved issues.</p>