+- <!-- JAL-3978 --> Jalview archive build getdown doesn't include wrapper scripts
+
+### New Known Issues
+
+- <!-- JAL-3124 --> Protein structure derived annotation tracks not available as reference annotation unless 'add to alignment' preference is enabled
+- <!-- JAL-4415 --> Enabling just "Add Secondary Structure" Structure preference when importing structure via CLI results in temperature factor being shown in alignment
+