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Jalview 2.6 source licence
[jalview.git]
/
src
/
MCview
/
AppletPDBCanvas.java
diff --git
a/src/MCview/AppletPDBCanvas.java
b/src/MCview/AppletPDBCanvas.java
index
6be8dd5
..
543d680
100755
(executable)
--- a/
src/MCview/AppletPDBCanvas.java
+++ b/
src/MCview/AppletPDBCanvas.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
* Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
@@
-176,8
+176,9
@@
public class AppletPDBCanvas extends Panel implements MouseListener,
// Now lets compare the sequences to get
// the start and end points.
// Align the sequence to the pdb
// Now lets compare the sequences to get
// the start and end points.
// Align the sequence to the pdb
+ // TODO: DNa/Pep switch
AlignSeq as = new AlignSeq(sequence, ((PDBChain) pdb.chains
AlignSeq as = new AlignSeq(sequence, ((PDBChain) pdb.chains
- .elementAt(i)).sequence, "pep");
+ .elementAt(i)).sequence, ((PDBChain) pdb.chains.elementAt(i)).isNa ? AlignSeq.DNA : AlignSeq.PEP);
as.calcScoreMatrix();
as.traceAlignment();
PrintStream ps = new PrintStream(System.out)
as.calcScoreMatrix();
as.traceAlignment();
PrintStream ps = new PrintStream(System.out)
@@
-1099,9
+1100,9
@@
public class AppletPDBCanvas extends Panel implements MouseListener,
// ////////////////////////////////
// /StructureListener
// ////////////////////////////////
// /StructureListener
- public String getPdbFile()
+ public String[] getPdbFile()
{
{
- return pdbentry.getFile();
+ return new String[] { pdbentry.getFile() };
}
String lastMessage;
}
String lastMessage;