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Highlight doesnt use offset
[jalview.git]
/
src
/
MCview
/
AppletPDBViewer.java
diff --git
a/src/MCview/AppletPDBViewer.java
b/src/MCview/AppletPDBViewer.java
index
e704f15
..
1ed4d10
100755
(executable)
--- a/
src/MCview/AppletPDBViewer.java
+++ b/
src/MCview/AppletPDBViewer.java
@@
-87,35
+87,33
@@
public class AppletPDBViewer extends Frame
}
\r
});
\r
charge.setLabel("Charge & Cysteine");
\r
}
\r
});
\r
charge.setLabel("Charge & Cysteine");
\r
- charge.addItemListener(new ItemListener()
\r
+ charge.addActionListener(new ActionListener()
\r
{
\r
{
\r
- public void itemStateChanged(ItemEvent e)
\r
+ public void actionPerformed(ActionEvent e)
\r
{
\r
charge_actionPerformed();
\r
}
\r
});
\r
hydro.setLabel("Hydrophobicity");
\r
{
\r
charge_actionPerformed();
\r
}
\r
});
\r
hydro.setLabel("Hydrophobicity");
\r
- hydro.addItemListener(new ItemListener()
\r
+ hydro.addActionListener(new ActionListener()
\r
{
\r
{
\r
- public void itemStateChanged(ItemEvent e)
\r
+ public void actionPerformed(ActionEvent e)
\r
{
\r
hydro_actionPerformed();
\r
}
\r
});
\r
chain.setLabel("By Chain");
\r
{
\r
hydro_actionPerformed();
\r
}
\r
});
\r
chain.setLabel("By Chain");
\r
- chain.addItemListener(new ItemListener()
\r
+ chain.addActionListener(new ActionListener()
\r
{
\r
{
\r
- public void itemStateChanged(ItemEvent e)
\r
+ public void actionPerformed(ActionEvent e)
\r
{
\r
chain_actionPerformed();
\r
}
\r
});
\r
{
\r
chain_actionPerformed();
\r
}
\r
});
\r
- seqButton.setState(true);
\r
seqButton.setLabel("By Sequence");
\r
seqButton.setLabel("By Sequence");
\r
- seqButton.addItemListener(new ItemListener()
\r
+ seqButton.addActionListener(new ActionListener()
\r
{
\r
{
\r
- public void itemStateChanged(ItemEvent e)
\r
- {
\r
+ public void actionPerformed(ActionEvent e){
\r
seqButton_actionPerformed();
\r
}
\r
});
\r
seqButton_actionPerformed();
\r
}
\r
});
\r
@@
-127,21
+125,30
@@
public class AppletPDBViewer extends Frame
molecule_actionPerformed();
\r
}
\r
});
\r
molecule_actionPerformed();
\r
}
\r
});
\r
- jMenuBar1.add(fileMenu);
\r
+ allchains.setLabel("All Chains Visible");
\r
+ allchains.addItemListener(new ItemListener()
\r
+ {
\r
+ public void itemStateChanged(ItemEvent itemEvent)
\r
+ {
\r
+ allchains_itemStateChanged(itemEvent);
\r
+ }
\r
+ });
\r
+ jMenuBar1.add(fileMenu);
\r
jMenuBar1.add(coloursMenu);
\r
fileMenu.add(mapping);;
\r
\r
coloursMenu.add(seqButton);
\r
coloursMenu.add(chain);
\r
jMenuBar1.add(coloursMenu);
\r
fileMenu.add(mapping);;
\r
\r
coloursMenu.add(seqButton);
\r
coloursMenu.add(chain);
\r
- coloursMenu.add(hydro);
\r
- coloursMenu.add(charge);
\r
- coloursMenu.addSeparator();
\r
+ coloursMenu.add(hydro);
\r
+ coloursMenu.add(charge);
\r
+ coloursMenu.add(molecule);
\r
+ coloursMenu.addSeparator();
\r
coloursMenu.add(wire);
\r
coloursMenu.add(depth);
\r
coloursMenu.add(zbuffer);
\r
coloursMenu.add(wire);
\r
coloursMenu.add(depth);
\r
coloursMenu.add(zbuffer);
\r
- coloursMenu.add(molecule);
\r
-
\r
- }
\r
+ coloursMenu.add(allchains);
\r
+ allchains.setState(true);
\r
+ }
\r
\r
MenuBar jMenuBar1 = new MenuBar();
\r
Menu fileMenu = new Menu();
\r
\r
MenuBar jMenuBar1 = new MenuBar();
\r
Menu fileMenu = new Menu();
\r
@@
-151,15
+158,16
@@
public class AppletPDBViewer extends Frame
CheckboxMenuItem wire = new CheckboxMenuItem();
\r
CheckboxMenuItem depth = new CheckboxMenuItem();
\r
CheckboxMenuItem zbuffer = new CheckboxMenuItem();
\r
CheckboxMenuItem wire = new CheckboxMenuItem();
\r
CheckboxMenuItem depth = new CheckboxMenuItem();
\r
CheckboxMenuItem zbuffer = new CheckboxMenuItem();
\r
- CheckboxMenuItem charge = new CheckboxMenuItem();
\r
\r
\r
+ MenuItem charge = new MenuItem();
\r
+ MenuItem hydro = new MenuItem();
\r
+ MenuItem chain = new MenuItem();
\r
+ MenuItem seqButton = new MenuItem();
\r
\r
\r
- CheckboxMenuItem hydro = new CheckboxMenuItem();
\r
- CheckboxMenuItem chain = new CheckboxMenuItem();
\r
- CheckboxMenuItem seqButton = new CheckboxMenuItem();
\r
CheckboxMenuItem molecule = new CheckboxMenuItem();
\r
CheckboxMenuItem molecule = new CheckboxMenuItem();
\r
+ CheckboxMenuItem allchains = new CheckboxMenuItem();
\r
\r
\r
- public void charge_actionPerformed()
\r
+ public void charge_actionPerformed()
\r
{
\r
clearButtonGroup();
\r
pdbcanvas.pdb.setChargeColours();
\r
{
\r
clearButtonGroup();
\r
pdbcanvas.pdb.setChargeColours();
\r
@@
-214,7
+222,7
@@
public class AppletPDBViewer extends Frame
public void seqButton_actionPerformed()
\r
{
\r
clearButtonGroup();
\r
public void seqButton_actionPerformed()
\r
{
\r
clearButtonGroup();
\r
- pdbcanvas.bysequence = seqButton.getState();
\r
+ pdbcanvas.bysequence = true;
\r
pdbcanvas.updateSeqColours();
\r
}
\r
\r
pdbcanvas.updateSeqColours();
\r
}
\r
\r
@@
-233,4
+241,9
@@
public class AppletPDBViewer extends Frame
jalview.bin.JalviewLite.addFrame(frame, "PDB - Sequence Mapping", 500, 600);
\r
cap.setText(pdbcanvas.mappingDetails.toString());
\r
}
\r
jalview.bin.JalviewLite.addFrame(frame, "PDB - Sequence Mapping", 500, 600);
\r
cap.setText(pdbcanvas.mappingDetails.toString());
\r
}
\r
- }
\r
+
\r
+ public void allchains_itemStateChanged(ItemEvent itemEvent)
\r
+ {
\r
+ pdbcanvas.setAllchainsVisible(allchains.getState());
\r
+ }
\r
+}
\r