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JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob
[jalview.git]
/
src
/
MCview
/
Atom.java
diff --git
a/src/MCview/Atom.java
b/src/MCview/Atom.java
index
894984a
..
b2fb5f5
100755
(executable)
--- a/
src/MCview/Atom.java
+++ b/
src/MCview/Atom.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-20,6
+20,8
@@
*/
package MCview;
*/
package MCview;
+import jalview.schemes.ResidueProperties;
+
import java.awt.Color;
public class Atom
import java.awt.Color;
public class Atom
@@
-73,6
+75,8
@@
public class Atom
name = str.substring(12, 15).trim();
resName = str.substring(17, 20);
name = str.substring(12, 15).trim();
resName = str.substring(17, 20);
+ // JAL-1828 treat MSE Selenomethionine as MET (etc)
+ resName = ResidueProperties.getCanonicalAminoAcid(resName);
chain = str.substring(21, 22);
chain = str.substring(21, 22);