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JAL-2416 JAL-2403 remove unused '*' row/column from score matrices
[jalview.git]
/
src
/
MCview
/
PDBChain.java
diff --git
a/src/MCview/PDBChain.java
b/src/MCview/PDBChain.java
index
6bc79dc
..
ba93046
100755
(executable)
--- a/
src/MCview/PDBChain.java
+++ b/
src/MCview/PDBChain.java
@@
-149,7
+149,7
@@
public class PDBChain
pdbpos++;
}
pdbpos++;
}
- boolean sameResidue = Comparison.compareChars(as.astr1.charAt(i),
+ boolean sameResidue = Comparison.isSameResidue(as.astr1.charAt(i),
as.astr2.charAt(i), false);
if (sameResidue)
{
as.astr2.charAt(i), false);
if (sameResidue)
{
@@
-518,10
+518,12
@@
public class PDBChain
try
{
index = ResidueProperties.aa3Hash.get(b.at1.resName).intValue();
try
{
index = ResidueProperties.aa3Hash.get(b.at1.resName).intValue();
- b.startCol = cs.findColour(ResidueProperties.aa[index].charAt(0));
+ b.startCol = cs.findColour(ResidueProperties.aa[index].charAt(0),
+ 0, null, null, 0f);
index = ResidueProperties.aa3Hash.get(b.at2.resName).intValue();
index = ResidueProperties.aa3Hash.get(b.at2.resName).intValue();
- b.endCol = cs.findColour(ResidueProperties.aa[index].charAt(0));
+ b.endCol = cs.findColour(ResidueProperties.aa[index].charAt(0), 0,
+ null, null, 0f);
} catch (Exception e)
{
} catch (Exception e)
{