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Parse id before url completion
[jalview.git]
/
src
/
MCview
/
PDBViewer.java
diff --git
a/src/MCview/PDBViewer.java
b/src/MCview/PDBViewer.java
index
06b6f65
..
082ce6e
100755
(executable)
--- a/
src/MCview/PDBViewer.java
+++ b/
src/MCview/PDBViewer.java
@@
-19,9
+19,13
@@
public class PDBViewer extends JInternalFrame implements Runnable
Sequence seq,
\r
SeqCanvas seqcanvas)
\r
{
\r
Sequence seq,
\r
SeqCanvas seqcanvas)
\r
{
\r
+
\r
pdb = entry;
\r
sequence = seq;
\r
\r
pdb = entry;
\r
sequence = seq;
\r
\r
+ Thread worker = new Thread(this);
\r
+ worker.start();
\r
+
\r
try
\r
{
\r
jbInit();
\r
try
\r
{
\r
jbInit();
\r
@@
-42,10
+46,8
@@
public class PDBViewer extends JInternalFrame implements Runnable
title.append( " Chain:" );
\r
title.append( pdb.getProperty().get("chains"));
\r
}
\r
title.append( " Chain:" );
\r
title.append( pdb.getProperty().get("chains"));
\r
}
\r
- Desktop.addInternalFrame(this,title.toString(),400, 400);
\r
\r
\r
- Thread worker = new Thread(this);
\r
- worker.start();
\r
+ Desktop.addInternalFrame(this,title.toString(),400, 400);
\r
}
\r
\r
public void run()
\r
}
\r
\r
public void run()
\r
@@
-53,8
+55,7
@@
public class PDBViewer extends JInternalFrame implements Runnable
try
\r
{
\r
EBIFetchClient ebi = new EBIFetchClient();
\r
try
\r
{
\r
EBIFetchClient ebi = new EBIFetchClient();
\r
- String[] result = ebi.fetchData("pdb:" + pdb.getId(), null,
\r
- null);
\r
+ String[] result = ebi.fetchData("pdb:" + pdb.getId(), "default","raw");
\r
\r
PDBfile pdbfile = new PDBfile(result);
\r
\r
\r
PDBfile pdbfile = new PDBfile(result);
\r
\r
@@
-337,7
+338,7
@@
public class PDBViewer extends JInternalFrame implements Runnable
public void mapping_actionPerformed(ActionEvent e)
\r
{
\r
jalview.gui.CutAndPasteTransfer cap = new jalview.gui.CutAndPasteTransfer();
\r
public void mapping_actionPerformed(ActionEvent e)
\r
{
\r
jalview.gui.CutAndPasteTransfer cap = new jalview.gui.CutAndPasteTransfer();
\r
- Desktop.addInternalFrame(cap, "PDB - Sequence Mapping", 500, 600);
\r
+ Desktop.addInternalFrame(cap, "PDB - Sequence Mapping", 550, 600);
\r
cap.setText(pdbcanvas.mappingDetails.toString());
\r
}
\r
\r
cap.setText(pdbcanvas.mappingDetails.toString());
\r
}
\r
\r