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findingFeatures flag set
[jalview.git]
/
src
/
MCview
/
PDBfile.java
diff --git
a/src/MCview/PDBfile.java
b/src/MCview/PDBfile.java
index
36eecb8
..
3153e3c
100755
(executable)
--- a/
src/MCview/PDBfile.java
+++ b/
src/MCview/PDBfile.java
@@
-18,13
+18,10
@@
*/
\r
package MCview;
\r
\r
*/
\r
package MCview;
\r
\r
-import jalview.io.AppletFormatAdapter;
\r
import jalview.datamodel.*;
\r
\r
import java.io.*;
\r
\r
import jalview.datamodel.*;
\r
\r
import java.io.*;
\r
\r
-import java.net.*;
\r
-
\r
import java.util.*;
\r
import java.awt.Color;
\r
\r
import java.util.*;
\r
import java.awt.Color;
\r
\r
@@
-103,6
+100,10
@@
public class PDBfile extends jalview.io.AlignFile {
makeResidueList();
\r
makeCaBondList();
\r
\r
makeResidueList();
\r
makeCaBondList();
\r
\r
+ if(id==null)
\r
+ {
\r
+ id = inFile.getName();
\r
+ }
\r
for (int i = 0; i < chains.size(); i++)
\r
{
\r
SequenceI seq = ( (PDBChain) chains.elementAt(i)).
\r
for (int i = 0; i < chains.size(); i++)
\r
{
\r
SequenceI seq = ( (PDBChain) chains.elementAt(i)).
\r
@@
-114,7
+115,8
@@
public class PDBfile extends jalview.io.AlignFile {
\r
PDBEntry entry = new PDBEntry();
\r
entry.setId(id);
\r
\r
PDBEntry entry = new PDBEntry();
\r
entry.setId(id);
\r
- entry.setFile(inFile.getAbsolutePath());
\r
+ if(inFile!=null)
\r
+ entry.setFile(inFile.getAbsolutePath());
\r
\r
seq.setDatasetSequence(dataset);
\r
dataset.addPDBId(entry);
\r
\r
seq.setDatasetSequence(dataset);
\r
dataset.addPDBId(entry);
\r