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[jalview.git]
/
src
/
MCview
/
PDBfile.java
diff --git
a/src/MCview/PDBfile.java
b/src/MCview/PDBfile.java
index
18b83ae
..
f246b8c
100755
(executable)
--- a/
src/MCview/PDBfile.java
+++ b/
src/MCview/PDBfile.java
@@
-56,18
+56,18
@@
public class PDBfile extends jalview.io.AlignFile
// TODO set the filename sensibly - try using data source name.
id = safeName(getDataName());
// TODO set the filename sensibly - try using data source name.
id = safeName(getDataName());
- chains = new Vector();
+ chains = new Vector();
- PDBChain tmpchain;
- String line=null;
- boolean modelFlag = false;
- boolean terFlag = false;
- String lastID = "";
+ PDBChain tmpchain;
+ String line = null;
+ boolean modelFlag = false;
+ boolean terFlag = false;
+ String lastID = "";
- int index = 0;
- String atomnam = null;
- try
- {
+ int index = 0;
+ String atomnam = null;
+ try
+ {
while ((line = nextLine()) != null)
{
if (line.indexOf("HEADER") == 0)
while ((line = nextLine()) != null)
{
if (line.indexOf("HEADER") == 0)
@@
-184,10
+184,10
@@
public class PDBfile extends jalview.io.AlignFile
{
System.out.println("OUT OF MEMORY LOADING PDB FILE");
throw new IOException("Out of memory loading PDB File");
{
System.out.println("OUT OF MEMORY LOADING PDB FILE");
throw new IOException("Out of memory loading PDB File");
- }
- catch (NumberFormatException ex)
+ } catch (NumberFormatException ex)
{
{
- if (line!=null) {
+ if (line != null)
+ {
System.err.println("Couldn't read number from line:");
System.err.println(line);
}
System.err.println("Couldn't read number from line:");
System.err.println(line);
}