git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-1998 bugfix for division by zero error for PDB entries with chain(s) consisiting...
[jalview.git]
/
src
/
MCview
/
Residue.java
diff --git
a/src/MCview/Residue.java
b/src/MCview/Residue.java
index
6789fe1
..
abb29a8
100755
(executable)
--- a/
src/MCview/Residue.java
+++ b/
src/MCview/Residue.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-20,32
+20,30
@@
*/
package MCview;
*/
package MCview;
-import java.util.*;
+import java.util.Vector;
public class Residue
{
public class Residue
{
- Vector atoms = new Vector();
+ Vector<Atom> atoms;
int number;
int count;
int number;
int count;
- int seqnumber;
-
- public Residue(Vector atoms, int number, int count)
+ public Residue(Vector<Atom> resAtoms, int number, int count)
{
{
- this.atoms = atoms;
+ this.atoms = resAtoms;
this.number = number;
this.count = count;
}
public Atom findAtom(String name)
{
this.number = number;
this.count = count;
}
public Atom findAtom(String name)
{
- for (int i = 0; i < atoms.size(); i++)
+ for (Atom atom : atoms)
{
{
- if (((Atom) atoms.elementAt(i)).name.equals(name))
+ if (atom.name.equals(name))
{
{
- return (Atom) atoms.elementAt(i);
+ return atom;
}
}
}
}