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Merge branch 'develop' into features/JAL-518_justify_seqs_in_region
[jalview.git]
/
src
/
jalview
/
analysis
/
AAFrequency.java
diff --git
a/src/jalview/analysis/AAFrequency.java
b/src/jalview/analysis/AAFrequency.java
index
b1505d6
..
6967885
100755
(executable)
--- a/
src/jalview/analysis/AAFrequency.java
+++ b/
src/jalview/analysis/AAFrequency.java
@@
-147,7
+147,7
@@
public class AAFrequency
{
if (sequences[row] == null)
{
{
if (sequences[row] == null)
{
- System.err.println(
+ jalview.bin.Console.errPrintln(
"WARNING: Consensus skipping null sequence - possible race condition.");
continue;
}
"WARNING: Consensus skipping null sequence - possible race condition.");
continue;
}
@@
-188,7
+188,7
@@
public class AAFrequency
}
return new Profiles(result);
// long elapsed = System.currentTimeMillis() - now;
}
return new Profiles(result);
// long elapsed = System.currentTimeMillis() - now;
- // System.out.println(elapsed);
+ // jalview.bin.Console.outPrintln(elapsed);
}
/**
}
/**
@@
-285,7
+285,7
@@
public class AAFrequency
' ', value);
}
// long elapsed = System.currentTimeMillis() - now;
' ', value);
}
// long elapsed = System.currentTimeMillis() - now;
- // System.out.println(-elapsed);
+ // jalview.bin.Console.outPrintln(-elapsed);
}
/**
}
/**