- residueHash.put("maxResidue", maxResidue);\r
- residueHash.put("size", new Integer(sequences.size()));\r
- residueHash.put("nongap", new Integer(nongap));\r
+ //Size is redundant at present if we calculate percentage here\r
+ //residueHash.put("size", new Integer(jSize));\r
+ //residueHash.put("nogaps", new Integer(nongap));\r
+\r
+ percentage = ((float)maxCount*100) / (float)jSize;\r
+ residueHash.put("pid_gaps", new Float(percentage) );\r
+\r
+ percentage = ((float)maxCount*100) / (float)nongap;\r
+ residueHash.put("pid_nogaps", new Float(percentage) );\r