- /** Takes in a !!ARRAY!! of sequences and column start and column end\r
- * and fills given Vector of size (end-start+1). Each element of the\r
- * vector contains a hashtable with the keys being residues and\r
- * the values being the count of each residue in that column.\r
- * This class is used extensively in calculating alignment colourschemes\r
- * that depend on the amount of conservation in each alignment column. */\r
+ //No need to store 1000s of strings which are not\r
+ //visible to the user.\r
+ public static final String MAXCOUNT = "C";\r
+ public static final String MAXRESIDUE="R";\r
+ public static final String PID_GAPS = "G";\r
+ public static final String PID_NOGAPS="N";\r