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JAL-4090 JAL-1551 spotlessApply
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignmentSorter.java
diff --git
a/src/jalview/analysis/AlignmentSorter.java
b/src/jalview/analysis/AlignmentSorter.java
index
b037336
..
1801674
100755
(executable)
--- a/
src/jalview/analysis/AlignmentSorter.java
+++ b/
src/jalview/analysis/AlignmentSorter.java
@@
-453,8
+453,8
@@
public class AlignmentSorter
if (tmp.size() != nSeq)
{
if (tmp.size() != nSeq)
{
- jalview.bin.Console.errPrintln("WARNING: tmp.size()=" + tmp.size() + " != nseq="
- + nSeq
+ jalview.bin.Console.errPrintln("WARNING: tmp.size()=" + tmp.size()
+ + " != nseq=" + nSeq
+ " in getOrderByTree - tree contains sequences not in alignment");
}
}
+ " in getOrderByTree - tree contains sequences not in alignment");
}
}
@@
-847,7
+847,8
@@
public class AlignmentSorter
int featureCount = feats[i] == null ? 0
: ((SequenceFeature[]) feats[i]).length;
scores[i] = featureCount;
int featureCount = feats[i] == null ? 0
: ((SequenceFeature[]) feats[i]).length;
scores[i] = featureCount;
- // jalview.bin.Console.errPrintln("Sorting on Density: seq "+seqs[i].getName()+
+ // jalview.bin.Console.errPrintln("Sorting on Density: seq
+ // "+seqs[i].getName()+
// " Feats: "+featureCount+" Score : "+scores[i]);
}
QuickSort.sortByDouble(scores, seqs, sortByFeatureAscending);
// " Feats: "+featureCount+" Score : "+scores[i]);
}
QuickSort.sortByDouble(scores, seqs, sortByFeatureAscending);