+ sortByPID(align, s, tosort, 0, -1);
+ }
+
+ /**
+ * Sort by Percentage Identity w.r.t. s
+ *
+ * @param align
+ * AlignmentI
+ * @param s
+ * SequenceI
+ * @param tosort
+ * sequences from align that are to be sorted.
+ * @param start
+ * start column (0 for beginning
+ * @param end
+ */
+ public static void sortByPID(AlignmentI align, SequenceI s,
+ SequenceI[] tosort, int start, int end)
+ {