git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-1807 disambiguated method signatures with numeric primitive args
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignmentSorter.java
diff --git
a/src/jalview/analysis/AlignmentSorter.java
b/src/jalview/analysis/AlignmentSorter.java
index
2fad332
..
4f7f2e2
100755
(executable)
--- a/
src/jalview/analysis/AlignmentSorter.java
+++ b/
src/jalview/analysis/AlignmentSorter.java
@@
-129,7
+129,7
@@
public class AlignmentSorter
seqs[i] = align.getSequenceAt(i);
}
seqs[i] = align.getSequenceAt(i);
}
- QuickSort.sort(scores, seqs);
+ QuickSort.sortFloat(scores, seqs);
setReverseOrder(align, seqs);
}
setReverseOrder(align, seqs);
}
@@
-268,7
+268,7
@@
public class AlignmentSorter
length[i] = (seqs[i].getEnd() - seqs[i].getStart());
}
length[i] = (seqs[i].getEnd() - seqs[i].getStart());
}
- QuickSort.sort(length, seqs);
+ QuickSort.sortFloat(length, seqs);
if (sortLengthAscending)
{
if (sortLengthAscending)
{
@@
-607,7
+607,7
@@
public class AlignmentSorter
.floatValue();
}
.floatValue();
}
- jalview.util.QuickSort.sort(ids, alignment);
+ jalview.util.QuickSort.sortFloat(ids, alignment);
}
/**
}
/**
@@
-674,7
+674,7
@@
public class AlignmentSorter
}
}
}
}
- jalview.util.QuickSort.sort(scores, seqs);
+ jalview.util.QuickSort.sortDouble(scores, seqs);
if (lastSortByScore != scoreLabel)
{
lastSortByScore = scoreLabel;
if (lastSortByScore != scoreLabel)
{
lastSortByScore = scoreLabel;
@@
-905,7
+905,7
@@
public class AlignmentSorter
}
}
}
}
- jalview.util.QuickSort.sort(scores, seqs);
+ jalview.util.QuickSort.sortDouble(scores, seqs);
}
else if (method == FEATURE_DENSITY)
{
}
else if (method == FEATURE_DENSITY)
{
@@
-922,7
+922,7
@@
public class AlignmentSorter
// System.err.println("Sorting on Density: seq "+seqs[i].getName()+
// " Feats: "+nf+" Score : "+scores[i]);
}
// System.err.println("Sorting on Density: seq "+seqs[i].getName()+
// " Feats: "+nf+" Score : "+scores[i]);
}
- jalview.util.QuickSort.sort(scores, seqs);
+ jalview.util.QuickSort.sortDouble(scores, seqs);
}
else
{
}
else
{