- * double-check feature overlaps columns (JAL-2544)
- * (could avoid this with a findPositions(fromCol, toCol) method)
- * findIndex returns base 1 column values, startCol/endCol are base 0
- */
- if (seqs[i].findIndex(sf.getBegin()) > endCol + 1
- || seqs[i].findIndex(sf.getEnd()) < startCol + 1)
- {
- it.remove();
- continue;
- }
-
- /*