git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-845 map 'STOP' codons correctly
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignmentUtils.java
diff --git
a/src/jalview/analysis/AlignmentUtils.java
b/src/jalview/analysis/AlignmentUtils.java
index
337372d
..
4576881
100644
(file)
--- a/
src/jalview/analysis/AlignmentUtils.java
+++ b/
src/jalview/analysis/AlignmentUtils.java
@@
-445,7
+445,7
@@
public class AlignmentUtils
* ? allow X in protein to match untranslatable in dna ?
*/
final char aaRes = aaSeqChars[aaResidue];
* ? allow X in protein to match untranslatable in dna ?
*/
final char aaRes = aaSeqChars[aaResidue];
- if (translated == null && aaRes == 'X')
+ if ((translated == null || "STOP".equals(translated)) && aaRes == 'X')
{
continue;
}
{
continue;
}