- String codon = base + base2 + base3;
- if (addPeptideVariant(peptide, peptidePos, residue, var,
- codon))
+ String codon = base.toUpperCase() + base2.toLowerCase()
+ + base3.toLowerCase();
+ String canonical = base1.toUpperCase() + base2.toLowerCase()
+ + base3.toLowerCase();
+ if (addPeptideVariant(peptide, peptidePos, residue, dnavar,
+ codon, canonical))