- char[] upstream = new String(ds.getSequence(s.getStart()-1-ustream_ds, s.getStart()-1)).toLowerCase().toCharArray();
- char[] downstream = new String(ds.getSequence(s_end-1,s_end+1+dstream_ds)).toLowerCase().toCharArray();
- char[] coreseq=s.getSequence();
- char[] nseq = new char[offset+upstream.length+downstream.length+coreseq.length];
+ char[] upstream = new String(ds.getSequence(s.getStart() - 1
+ - ustream_ds, s.getStart() - 1)).toLowerCase().toCharArray();
+ char[] downstream = new String(ds.getSequence(s_end - 1, s_end + 1
+ + dstream_ds)).toLowerCase().toCharArray();
+ char[] coreseq = s.getSequence();
+ char[] nseq = new char[offset + upstream.length + downstream.length
+ + coreseq.length];