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JAL-2416 JAL-2403 remove unused '*' row/column from score matrices
[jalview.git]
/
src
/
jalview
/
analysis
/
Conservation.java
diff --git
a/src/jalview/analysis/Conservation.java
b/src/jalview/analysis/Conservation.java
index
55881d7
..
f4346c3
100755
(executable)
--- a/
src/jalview/analysis/Conservation.java
+++ b/
src/jalview/analysis/Conservation.java
@@
-614,9
+614,7
@@
public class Conservation
lengths[l] = seqNums.elementAt(l).length - 1;
}
lengths[l] = seqNums.elementAt(l).length - 1;
}
- // todo ? remove '*' (unused?) from score matrix and
- // use getSize() here instead of getSize() - 1 ??
- final int symbolCount = blosum62.getSize() - 1; // 24;
+ final int symbolCount = blosum62.getSize();
int gapIndex = blosum62.getGapIndex();
for (j = startRes; j <= endRes; j++)
int gapIndex = blosum62.getGapIndex();
for (j = startRes; j <= endRes; j++)