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Alignment might not have any annotations
[jalview.git]
/
src
/
jalview
/
analysis
/
Conservation.java
diff --git
a/src/jalview/analysis/Conservation.java
b/src/jalview/analysis/Conservation.java
index
b914108
..
0aa9805
100755
(executable)
--- a/
src/jalview/analysis/Conservation.java
+++ b/
src/jalview/analysis/Conservation.java
@@
-165,7
+165,8
@@
public class Conservation
{
\r
c = sequence.getCharAt(i);
\r
\r
{
\r
c = sequence.getCharAt(i);
\r
\r
- if(jalview.util.Comparison.isGap(c))
\r
+ // No need to check if its a '-'
\r
+ if(c == '.' || c==' ')
\r
c = '-';
\r
\r
if ('a' <= c && c <= 'z')
\r
c = '-';
\r
\r
if ('a' <= c && c <= 'z')
\r