git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-3829 attempt to fix my changes to follow the Jira issue
[jalview.git]
/
src
/
jalview
/
analysis
/
CrossRef.java
diff --git
a/src/jalview/analysis/CrossRef.java
b/src/jalview/analysis/CrossRef.java
index
00bb63a
..
c54357e
100644
(file)
--- a/
src/jalview/analysis/CrossRef.java
+++ b/
src/jalview/analysis/CrossRef.java
@@
-483,7
+483,7
@@
public class CrossRef
private void removeAlreadyRetrievedSeqs(List<DBRefEntry> sourceRefs,
boolean fromDna)
{
private void removeAlreadyRetrievedSeqs(List<DBRefEntry> sourceRefs,
boolean fromDna)
{
- List<DBRefEntry> dbrSourceSet = new ArrayList<DBRefEntry>(sourceRefs);
+ List<DBRefEntry> dbrSourceSet = new ArrayList<>(sourceRefs);
List<SequenceI> dsSeqs = dataset.getSequences();
for (int ids = 0, nds = dsSeqs.size(); ids < nds; ids++)
{
List<SequenceI> dsSeqs = dataset.getSequences();
for (int ids = 0, nds = dsSeqs.size(); ids < nds; ids++)
{
@@
-929,7
+929,7
@@
public class CrossRef
if (fromDna)
{
if (fromDna)
{
- AlignmentUtils.computeProteinFeatures(mapFrom, mapTo, mapping);
+ // AlignmentUtils.computeProteinFeatures(mapFrom, mapTo, mapping);
mappings.addMap(mapFrom, mapTo, mapping);
}
else
mappings.addMap(mapFrom, mapTo, mapping);
}
else