jalview.datamodel.DBRefSource.DNACODINGDBS);
if (dnarefs != null)
{
// intersect with pep
List<DBRefEntry> mappedrefs = new ArrayList<DBRefEntry>();
jalview.datamodel.DBRefSource.DNACODINGDBS);
if (dnarefs != null)
{
// intersect with pep
List<DBRefEntry> mappedrefs = new ArrayList<DBRefEntry>();
for (int d = 0; d < refs.length; d++)
{
if (refs[d].getMap() != null && refs[d].getMap().getMap() != null
for (int d = 0; d < refs.length; d++)
{
if (refs[d].getMap() != null && refs[d].getMap().getMap() != null
char[] originalSequence = sequence.toCharArray();
int length = originalSequence.length;
char[] reversedSequence = new char[length];
char[] originalSequence = sequence.toCharArray();
int length = originalSequence.length;
char[] reversedSequence = new char[length];
- SequenceI reversed = new Sequence(newName, reversedSequence, 1, length);
+ SequenceI reversed = new Sequence(newName, reversedSequence, 1, bases);