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JAL-1318 - route warnings to stderr (need to find a better solution for JAL-1069)
[jalview.git]
/
src
/
jalview
/
analysis
/
Dna.java
diff --git
a/src/jalview/analysis/Dna.java
b/src/jalview/analysis/Dna.java
index
5228413
..
cbe871d
100644
(file)
--- a/
src/jalview/analysis/Dna.java
+++ b/
src/jalview/analysis/Dna.java
@@
-565,8
+565,11
@@
public class Dna
protein.toString());
if (rf != 0)
{
protein.toString());
if (rf != 0)
{
- jalview.bin.Cache.log
- .debug("trimming contigs for incomplete terminal codon.");
+ if (jalview.bin.Cache.log!=null) {
+ jalview.bin.Cache.log.debug("trimming contigs for incomplete terminal codon.");
+ } else {
+ System.err.println("trimming contigs for incomplete terminal codon.");
+ }
// map and trim contigs to ORF region
vc = scontigs.length - 1;
lastnpos = vismapping.shift(lastnpos); // place npos in context of
// map and trim contigs to ORF region
vc = scontigs.length - 1;
lastnpos = vismapping.shift(lastnpos); // place npos in context of