-
- /**
- * Answers the absolute column position (base 0, including any hidden columns)
- * of the start of the last sequence motif (residue pattern) match found. A
- * 'Find next' will search from the next position.
- *
- * @return
- */
- public int getColumnIndex()
- {
- return columnIndex;
- }
-
- /**
- * Answers the offset in the alignment (0..) of the sequence in which the last
- * match was found (if any)
- *
- * @return
- */
- public int getSequenceIndex()
- {
- return sequenceIndex;
- }
-
- /**
- * Sets whether search also searches in sequence description text (default is
- * no)
- *
- * @param value
- */
- public void setIncludeDescription(boolean value)
- {
- this.includeDescription = value;
- }