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JAL-4366 allow a 3di alignment to be loaded and shown as a split frame with existing...
[jalview.git]
/
src
/
jalview
/
analysis
/
GeneticCodes.java
diff --git
a/src/jalview/analysis/GeneticCodes.java
b/src/jalview/analysis/GeneticCodes.java
index
133cb3a
..
c91cfa2
100644
(file)
--- a/
src/jalview/analysis/GeneticCodes.java
+++ b/
src/jalview/analysis/GeneticCodes.java
@@
-140,7
+140,8
@@
public final class GeneticCodes
InputStream is = getClass().getResourceAsStream(fileName);
if (is == null)
{
InputStream is = getClass().getResourceAsStream(fileName);
if (is == null)
{
- System.err.println("Resource file not found: " + fileName);
+ jalview.bin.Console
+ .errPrintln("Resource file not found: " + fileName);
return;
}
BufferedReader dataIn = new BufferedReader(new InputStreamReader(is));
return;
}
BufferedReader dataIn = new BufferedReader(new InputStreamReader(is));
@@
-166,7
+167,7
@@
public final class GeneticCodes
}
if (codeTables.isEmpty())
{
}
if (codeTables.isEmpty())
{
- System.err.println(
+ jalview.bin.Console.errPrintln(
"No genetic code tables loaded, check format of file "
+ fileName);
}
"No genetic code tables loaded, check format of file "
+ fileName);
}
@@
-190,7
+191,8
@@
public final class GeneticCodes
InputStream is = getClass().getResourceAsStream(fileName);
if (is == null)
{
InputStream is = getClass().getResourceAsStream(fileName);
if (is == null)
{
- System.err.println("Resource file not found: " + fileName);
+ jalview.bin.Console
+ .errPrintln("Resource file not found: " + fileName);
return;
}
BufferedReader dataIn = new BufferedReader(new InputStreamReader(is));
return;
}
BufferedReader dataIn = new BufferedReader(new InputStreamReader(is));
@@
-208,7
+210,7
@@
public final class GeneticCodes
}
else
{
}
else
{
- System.err.println(
+ jalview.bin.Console.errPrintln(
"Unexpected data in " + fileName + ": " + line);
}
}
"Unexpected data in " + fileName + ": " + line);
}
}