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JAL-2541 save/Undo only 'diffs' for features with Cut command
[jalview.git]
/
src
/
jalview
/
analysis
/
Grouping.java
diff --git
a/src/jalview/analysis/Grouping.java
b/src/jalview/analysis/Grouping.java
index
f74b5d8
..
066814e
100644
(file)
--- a/
src/jalview/analysis/Grouping.java
+++ b/
src/jalview/analysis/Grouping.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-91,8
+91,8
@@
public class Grouping
i = 0;
for (String key : gps.keySet())
{
i = 0;
for (String key : gps.keySet())
{
- SequenceGroup group = new SequenceGroup(gps.get(key), "Subseq: "
- + key, null, true, true, false, 0, width - 1);
+ SequenceGroup group = new SequenceGroup(gps.get(key),
+ "Subseq: " + key, null, true, true, false, 0, width - 1);
groups[i++] = group;
}
groups[i++] = group;
}
@@
-127,6
+127,11
@@
public class Grouping
}
}
}
}
}
}
+
+ /*
+ * get selected columns (in the order they were selected);
+ * note this could include right-to-left ranges
+ */
int[] spos = new int[cs.getSelected().size()];
int width = -1;
int i = 0;
int[] spos = new int[cs.getSelected().size()];
int width = -1;
int i = 0;
@@
-134,7
+139,7
@@
public class Grouping
{
spos[i++] = pos.intValue();
}
{
spos[i++] = pos.intValue();
}
- ;
+
for (i = 0; i < sequences.length; i++)
{
int slen = sequences[i].getLength();
for (i = 0; i < sequences.length; i++)
{
int slen = sequences[i].getLength();
@@
-173,8
+178,8
@@
public class Grouping
i = 0;
for (String key : gps.keySet())
{
i = 0;
for (String key : gps.keySet())
{
- SequenceGroup group = new SequenceGroup(gps.get(key), "Subseq: "
- + key, null, true, true, false, 0, width - 1);
+ SequenceGroup group = new SequenceGroup(gps.get(key),
+ "Subseq: " + key, null, true, true, false, 0, width - 1);
groups[i++] = group;
}
groups[i++] = group;
}