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JAL-2284 basic support for exporting BioJS MSA viewer via CLI
[jalview.git]
/
src
/
jalview
/
analysis
/
NJTree.java
diff --git
a/src/jalview/analysis/NJTree.java
b/src/jalview/analysis/NJTree.java
index
96b45c1
..
e0e50fb
100644
(file)
--- a/
src/jalview/analysis/NJTree.java
+++ b/
src/jalview/analysis/NJTree.java
@@
-878,8
+878,7
@@
public class NJTree
if ((nd.left() == null) && (nd.right() == null))
{
if ((nd.left() == null) && (nd.right() == null))
{
- System.out
- .println("Leaf = " + ((SequenceI) nd.element()).getName());
+ System.out.println("Leaf = " + ((SequenceI) nd.element()).getName());
System.out.println("Dist " + nd.dist);
System.out.println("Boot " + nd.getBootstrap());
}
System.out.println("Dist " + nd.dist);
System.out.println("Boot " + nd.getBootstrap());
}
@@
-1108,8
+1107,7
@@
public class NJTree
}
else
{
}
else
{
- System.out.println(" name = "
- + ((SequenceI) nd.element()).getName());
+ System.out.println(" name = " + ((SequenceI) nd.element()).getName());
}
System.out.println(" dist = " + nd.dist + " " + nd.count + " "
}
System.out.println(" dist = " + nd.dist + " " + nd.count + " "
@@
-1303,8
+1301,8
@@
public class NJTree
public void applyToNodes(NodeTransformI nodeTransformI)
{
for (Enumeration<SequenceNode> nodes = node.elements(); nodes
public void applyToNodes(NodeTransformI nodeTransformI)
{
for (Enumeration<SequenceNode> nodes = node.elements(); nodes
- .hasMoreElements(); nodeTransformI
- .transform(nodes.nextElement()))
+ .hasMoreElements(); nodeTransformI.transform(nodes
+ .nextElement()))
{
;
}
{
;
}