- return count;
- }
- public static void main(String argv[]) {
- SequenceI[] seqs = new SequenceI[] { new Sequence("sq1","THISISAPLACEHOLDER"),
- new Sequence("sq2","THISISAPLACEHOLDER"),
- new Sequence("sq3","THISISAPLACEHOLDER"),
- new Sequence("sq4","THISISAPLACEHOLDER")};
- seqs[0].setDescription("1 mydescription1");
- seqs[1].setDescription("mydescription2");
- seqs[2].setDescription("2. 0.1 mydescription3");
- seqs[3].setDescription("3 0.01 mydescription4");
- //seqs[4].setDescription("5 mydescription5");
- Alignment al = new Alignment(seqs);
- ParseProperties pp = new ParseProperties(al);
- String regex = ".*([-0-9.+]+)";
- System.out.println("Matched "+pp.getScoresFromDescription("my Score", "my Score Description",regex, true)+" for "+regex);
- regex = ".*([-0-9.+]+).+([-0-9.+]+).*";
- System.out.println("Matched "+pp.getScoresFromDescription("my Score", "my Score Description",regex, true)+" for "+regex);
- System.out.println("Finished.");