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JAL-3365 per-sequence secondary structure symbol ‘X’ is not properly exported and...
[jalview.git]
/
src
/
jalview
/
analysis
/
Rna.java
diff --git
a/src/jalview/analysis/Rna.java
b/src/jalview/analysis/Rna.java
index
0d39abf
..
9649240
100644
(file)
--- a/
src/jalview/analysis/Rna.java
+++ b/
src/jalview/analysis/Rna.java
@@
-198,10
+198,6
@@
public class Rna
return pairs;
}
return pairs;
}
-
-
-
-
/**
* Function to get the end position corresponding to a given start position
*
/**
* Function to get the end position corresponding to a given start position
*
@@
-440,8
+436,8
@@
public class Rna
/*
* catch things like <<..<<..>>..<<..>>>> |
*/
/*
* catch things like <<..<<..>>..<<..>>>> |
*/
- int j = bps.size() - 1;
- while (j >= 0)
+ int j = bps.size();
+ while (--j >= 0)
{
int popen = bps.get(j).getBP5();
{
int popen = bps.get(j).getBP5();
@@
-460,7
+456,6
@@
public class Rna
break;
}
}
break;
}
}
- j -= 1;
}
// Put positions and helix information into the hashtable
}
// Put positions and helix information into the hashtable