git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Doesnt move with mouse, friendlier for mac users
[jalview.git]
/
src
/
jalview
/
analysis
/
SeqsetUtils.java
diff --git
a/src/jalview/analysis/SeqsetUtils.java
b/src/jalview/analysis/SeqsetUtils.java
index
885305a
..
00fbad5
100755
(executable)
--- a/
src/jalview/analysis/SeqsetUtils.java
+++ b/
src/jalview/analysis/SeqsetUtils.java
@@
-204,7
+204,10
@@
public class SeqsetUtils
boolean ungapped[] = new boolean[sequences.length];
int msflen=0;
for (int i=0,j=sequences.length; i<j;i++) {
boolean ungapped[] = new boolean[sequences.length];
int msflen=0;
for (int i=0,j=sequences.length; i<j;i++) {
- String tempseq = jalview.analysis.AlignSeq.extractGaps(jalview.util.Comparison.GapChars, sequences[i].getSequence());
+ String tempseq = jalview.analysis.AlignSeq.extractGaps(
+ jalview.util.Comparison.GapChars,
+ sequences[i].getSequenceAsString());
+
if (tempseq.length()==0)
ungapped[i]=false;
else {
if (tempseq.length()==0)
ungapped[i]=false;
else {