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Merge branch 'Jalview-JS/develop' into develop
[jalview.git]
/
src
/
jalview
/
analysis
/
SequenceIdMatcher.java
diff --git
a/src/jalview/analysis/SequenceIdMatcher.java
b/src/jalview/analysis/SequenceIdMatcher.java
index
3d4cbe7
..
a85c7f3
100755
(executable)
--- a/
src/jalview/analysis/SequenceIdMatcher.java
+++ b/
src/jalview/analysis/SequenceIdMatcher.java
@@
-74,13
+74,13
@@
public class SequenceIdMatcher
dbseq = dbseq.getDatasetSequence();
}
// add in any interesting identifiers
dbseq = dbseq.getDatasetSequence();
}
// add in any interesting identifiers
- if (dbseq.getDBRefs() != null)
+ List<DBRefEntry> dbr = dbseq.getDBRefs();
+ if (dbr != null)
{
{
- DBRefEntry dbr[] = dbseq.getDBRefs();
SeqIdName sid = null;
SeqIdName sid = null;
- for (int r = 0; r < dbr.length; r++)
+ for (int r = 0, nr = dbr.size(); r < nr; r++)
{
{
- sid = new SeqIdName(dbr[r].getAccessionId());
+ sid = new SeqIdName(dbr.get(r).getAccessionId());
if (!names.containsKey(sid))
{
names.put(sid, seq);
if (!names.containsKey(sid))
{
names.put(sid, seq);