+ /**\r
+ * Characters that define the end of a unique sequence ID at\r
+ * the beginning of an arbitrary ID string\r
+ * JBPNote: This is a heuristic that will fail for arbritrarily extended sequence id's\r
+ * (like portions of an aligned set of repeats from one sequence)\r
+ */\r
+ private String WORD_SEP="~. |#\\/<>!\"£$%^*)}[@',?";\r
+\r
+ /**\r
+ * matches if one ID properly contains another at a whitespace boundary.\r
+ * TODO: (JBPNote) These are not efficient. should use char[] for speed\r
+ * todo: (JBPNote) Set separator characters appropriately\r
+ * @param s SeqIdName\r
+ * @return boolean\r
+ */\r