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JAL-2795 Reverted code changes needed to cluster from Forester
[jalview.git]
/
src
/
jalview
/
analysis
/
TreeBuilder.java
diff --git
a/src/jalview/analysis/TreeBuilder.java
b/src/jalview/analysis/TreeBuilder.java
index
30b83b3
..
0cd340e
100644
(file)
--- a/
src/jalview/analysis/TreeBuilder.java
+++ b/
src/jalview/analysis/TreeBuilder.java
@@
-53,8
+53,6
@@
public abstract class TreeBuilder
protected MatrixI distances;
protected MatrixI distances;
- public MatrixI testDistances;
-
protected int mini;
protected int minj;
protected int mini;
protected int minj;
@@
-305,8
+303,8
@@
public abstract class TreeBuilder
this.scoreModel = sm;
this.scoreParams = scoreOptions;
this.scoreModel = sm;
this.scoreParams = scoreOptions;
- testDistances = scoreModel.findDistances(seqData, scoreParams);
distances = scoreModel.findDistances(seqData, scoreParams);
distances = scoreModel.findDistances(seqData, scoreParams);
+
makeLeaves();
noClus = clusters.size();
makeLeaves();
noClus = clusters.size();