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JAL-2526 correct boundary conditions for sequence left/right of cursor
[jalview.git]
/
src
/
jalview
/
analysis
/
scoremodels
/
PIDModel.java
diff --git
a/src/jalview/analysis/scoremodels/PIDModel.java
b/src/jalview/analysis/scoremodels/PIDModel.java
index
985918b
..
721ba45
100644
(file)
--- a/
src/jalview/analysis/scoremodels/PIDModel.java
+++ b/
src/jalview/analysis/scoremodels/PIDModel.java
@@
-1,6
+1,8
@@
package jalview.analysis.scoremodels;
package jalview.analysis.scoremodels;
+import jalview.api.AlignmentViewPanel;
import jalview.api.analysis.PairwiseScoreModelI;
import jalview.api.analysis.PairwiseScoreModelI;
+import jalview.api.analysis.ScoreModelI;
import jalview.api.analysis.SimilarityParamsI;
import jalview.datamodel.AlignmentView;
import jalview.math.Matrix;
import jalview.api.analysis.SimilarityParamsI;
import jalview.datamodel.AlignmentView;
import jalview.math.Matrix;
@@
-9,7
+11,8
@@
import jalview.util.Comparison;
/**
* A class to provide sequence pairwise similarity based on residue identity.
/**
* A class to provide sequence pairwise similarity based on residue identity.
- * Instances of this class are immutable and thread-safe.
+ * Instances of this class are immutable and thread-safe, so the same object is
+ * returned from calls to getInstance().
*/
public class PIDModel extends SimilarityScoreModel implements
PairwiseScoreModelI
*/
public class PIDModel extends SimilarityScoreModel implements
PairwiseScoreModelI
@@
-231,4
+234,10
@@
public class PIDModel extends SimilarityScoreModel implements
return divideBy == 0 ? 0D : 100D * total / divideBy;
}
return divideBy == 0 ? 0D : 100D * total / divideBy;
}
+
+ @Override
+ public ScoreModelI getInstance(AlignmentViewPanel avp)
+ {
+ return this;
+ }
}
}