-
- /**
- * @return true if a reference sequence is set and should be displayed
- */
- public boolean isDisplayReferenceSeq();
-
- /**
- * @return set the flag for displaying reference sequences when they are
- * available
- */
- public void setDisplayReferenceSeq(boolean displayReferenceSeq);
-
- /**
- * @return true if colourschemes should render according to reference sequence
- * rather than consensus if available
- */
- public boolean isColourByReferenceSeq();
-
- /**
- * @return true set flag for deciding if colourschemes should render according
- * to reference sequence rather than consensus if available
- */
- public void setColourByReferenceSeq(boolean colourByReferenceSeq);