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JAL-1395 do not calculate non-gap consensus when no symbols present in column (regres...
[jalview.git]
/
src
/
jalview
/
api
/
AlignViewportI.java
diff --git
a/src/jalview/api/AlignViewportI.java
b/src/jalview/api/AlignViewportI.java
index
15e5f1d
..
5f759b8
100644
(file)
--- a/
src/jalview/api/AlignViewportI.java
+++ b/
src/jalview/api/AlignViewportI.java
@@
-159,11
+159,17
@@
public interface AlignViewportI
void updateGroupAnnotationSettings(boolean applyGlobalSettings,
boolean preserveNewGroupSettings);
void updateGroupAnnotationSettings(boolean applyGlobalSettings,
boolean preserveNewGroupSettings);
+ void setSequenceColour(SequenceI seq, Color col);
+
+ Color getSequenceColour(SequenceI seq);
+
+ void updateSequenceIdColours();
SequenceGroup getSelectionGroup();
SequenceI[] getSequenceSelection();
SequenceGroup getSelectionGroup();
SequenceI[] getSequenceSelection();
+ void clearSequenceColours();
CigarArray getViewAsCigars(boolean selectedRegionOnly);
CigarArray getViewAsCigars(boolean selectedRegionOnly);