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JAL-2773 add new flag to paintAlignment(updateOverview,updateStructures) and first...
[jalview.git]
/
src
/
jalview
/
api
/
AlignmentViewPanel.java
diff --git
a/src/jalview/api/AlignmentViewPanel.java
b/src/jalview/api/AlignmentViewPanel.java
index
0955cb4
..
0b1ca21
100644
(file)
--- a/
src/jalview/api/AlignmentViewPanel.java
+++ b/
src/jalview/api/AlignmentViewPanel.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-32,6
+32,8
@@
import jalview.structure.StructureSelectionManager;
public interface AlignmentViewPanel extends OOMHandlerI
{
public interface AlignmentViewPanel extends OOMHandlerI
{
+ AlignViewportI getAlignViewport();
+
AlignmentI getAlignment();
StructureSelectionManager getStructureSelectionManager();
AlignmentI getAlignment();
StructureSelectionManager getStructureSelectionManager();
@@
-41,9
+43,10
@@
public interface AlignmentViewPanel extends OOMHandlerI
*
* @param updateOverview
* - if true, the overview panel will also be updated and repainted
*
* @param updateOverview
* - if true, the overview panel will also be updated and repainted
+ * @param updateStructures
+ * - if true then any linked structure views will also be updated
*/
*/
-
- void paintAlignment(boolean updateOverview);
+ void paintAlignment(boolean updateOverview, boolean updateStructures);
/**
* automatically adjust annotation panel height for new annotation whilst
/**
* automatically adjust annotation panel height for new annotation whilst
@@
-51,6
+54,10
@@
public interface AlignmentViewPanel extends OOMHandlerI
*/
void adjustAnnotationHeight();
*/
void adjustAnnotationHeight();
+ FeatureRenderer getFeatureRenderer();
+
+ FeatureRenderer cloneFeatureRenderer();
+
/**
*
* @return displayed name for the view
/**
*
* @return displayed name for the view