+ Object getFeatureStyle(String ft);
+
+ void setColour(String ft, Object ggc);
+
+ AlignViewportI getViewport();
+
+ FeaturesDisplayedI getFeaturesDisplayed();
+
+ Map<String,Object> getFeatureColours();
+
+ void findAllFeatures(boolean newMadeVisible);
+
+ Map<String,Object> getDisplayedFeatureCols();
+
+ List<String> getFeatureGroups();
+
+ List<String> getGroups(boolean visible);
+
+ void setGroupVisibility(List<String> toset, boolean visible);
+
+ void setGroupVisibility(String group, boolean visible);
+
+ List<SequenceFeature> findFeaturesAtRes(SequenceI sequence, int res);
+
+ boolean isTransparencyAvailable();
+
+ String[] getDisplayedFeatureTypes();
+
+ String[] getDisplayedFeatureGroups();
+
+ void setAllVisible(List<String> featureTypes);
+
+ void setVisible(String featureType);
+