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JAL-2323 revert to thread-safe iteration over array field
[jalview.git]
/
src
/
jalview
/
api
/
FeatureRenderer.java
diff --git
a/src/jalview/api/FeatureRenderer.java
b/src/jalview/api/FeatureRenderer.java
index
70c1e07
..
dbc9880
100644
(file)
--- a/
src/jalview/api/FeatureRenderer.java
+++ b/
src/jalview/api/FeatureRenderer.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-60,17
+60,15
@@
public interface FeatureRenderer
* @param ft
* @return display style for a feature
*/
* @param ft
* @return display style for a feature
*/
- Object getFeatureStyle(String ft);
+ FeatureColourI getFeatureStyle(String ft);
/**
* update the feature style for a particular feature
*
* @param ft
* @param ggc
/**
* update the feature style for a particular feature
*
* @param ft
* @param ggc
- * - currently allows java.awt.Color and
- * jalview.schemes.GraduatedColor
*/
*/
- void setColour(String ft, Object ggc);
+ void setColour(String ft, FeatureColourI ggc);
AlignViewportI getViewport();
AlignViewportI getViewport();
@@
-85,7
+83,7
@@
public interface FeatureRenderer
*
* @return
*/
*
* @return
*/
- Map<String, Object> getFeatureColours();
+ Map<String, FeatureColourI> getFeatureColours();
/**
* query the alignment view to find all features
/**
* query the alignment view to find all features
@@
-100,7
+98,7
@@
public interface FeatureRenderer
*
* @return
*/
*
* @return
*/
- Map<String, Object> getDisplayedFeatureCols();
+ Map<String, FeatureColourI> getDisplayedFeatureCols();
/**
* get all registered groups
/**
* get all registered groups
@@
-143,25
+141,19
@@
public interface FeatureRenderer
List<SequenceFeature> findFeaturesAtRes(SequenceI sequence, int res);
/**
List<SequenceFeature> findFeaturesAtRes(SequenceI sequence, int res);
/**
+ * get current displayed types, in ordering of rendering (on top last)
*
*
- * @return true if the rendering platform supports transparency
+ * @return a (possibly empty) list of feature types
*/
*/
- boolean isTransparencyAvailable();
- /**
- * get current displayed types
- *
- * @return
- */
-
- String[] getDisplayedFeatureTypes();
+ List<String> getDisplayedFeatureTypes();
/**
* get current displayed groups
*
/**
* get current displayed groups
*
- * @return
+ * @return a (possibly empty) list of feature groups
*/
*/
- String[] getDisplayedFeatureGroups();
+ List<String> getDisplayedFeatureGroups();
/**
* display all features of these types
/**
* display all features of these types