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JAL-3446 no actual changes; just using meaningful frame options
[jalview.git]
/
src
/
jalview
/
api
/
SiftsClientI.java
diff --git
a/src/jalview/api/SiftsClientI.java
b/src/jalview/api/SiftsClientI.java
index
527ae17
..
367a0de
100644
(file)
--- a/
src/jalview/api/SiftsClientI.java
+++ b/
src/jalview/api/SiftsClientI.java
@@
-48,13
+48,6
@@
public interface SiftsClientI
public String getDbCoordSys();
/**
public String getDbCoordSys();
/**
- * Get DB Evidence for the SIFTs Entry
- *
- * @return
- */
- public String getDbEvidence();
-
- /**
* Get DB Source for the SIFTs Entry
*
* @return
* Get DB Source for the SIFTs Entry
*
* @return
@@
-101,20
+94,13
@@
public interface SiftsClientI
public boolean isAccessionMatched(String accessionId);
/**
public boolean isAccessionMatched(String accessionId);
/**
- * Get the standard DB referenced by the SIFTs Entry
- *
- * @return
- */
- public String[] getEntryDBs();
-
- /**
*
* @param mop
* MappingOutputPojo
* @return Sequence<->Structure mapping as int[][]
* @throws SiftsException
*/
*
* @param mop
* MappingOutputPojo
* @return Sequence<->Structure mapping as int[][]
* @throws SiftsException
*/
- public StringBuffer getMappingOutput(MappingOutputPojo mop)
+ public StringBuilder getMappingOutput(MappingOutputPojo mop)
throws SiftsException;
/**
throws SiftsException;
/**
@@
-130,7
+116,7
@@
public interface SiftsClientI
*/
public StructureMapping getSiftsStructureMapping(SequenceI seq,
String pdbFile, String chain) throws SiftsException;
*/
public StructureMapping getSiftsStructureMapping(SequenceI seq,
String pdbFile, String chain) throws SiftsException;
-
+
/**
* Get residue by residue mapping for a given Sequence and SIFTs entity
*
/**
* Get residue by residue mapping for a given Sequence and SIFTs entity
*
@@
-142,6
+128,5
@@
public interface SiftsClientI
* @throws Exception
*/
public HashMap<Integer, int[]> getGreedyMapping(String entityId,
* @throws Exception
*/
public HashMap<Integer, int[]> getGreedyMapping(String entityId,
- SequenceI seq,
- java.io.PrintStream os) throws SiftsException;
+ SequenceI seq, java.io.PrintStream os) throws SiftsException;
}
\ No newline at end of file
}
\ No newline at end of file