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JAL-1884 add the JNLP template to jalview_jnlp_vm.jar
[jalview.git]
/
src
/
jalview
/
api
/
structures
/
JalviewStructureDisplayI.java
diff --git
a/src/jalview/api/structures/JalviewStructureDisplayI.java
b/src/jalview/api/structures/JalviewStructureDisplayI.java
index
efb60dd
..
da16800
100644
(file)
--- a/
src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/
src/jalview/api/structures/JalviewStructureDisplayI.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-20,21
+20,13
@@
*/
package jalview.api.structures;
*/
package jalview.api.structures;
-import jalview.api.FeatureRenderer;
-import jalview.api.SequenceRenderer;
-import jalview.api.SequenceStructureBinding;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.SequenceI;
-import jalview.ext.jmol.JalviewJmolBinding;
import jalview.schemes.ColourSchemeI;
import jalview.schemes.ColourSchemeI;
-import jalview.schemes.UserColourScheme;
-import jalview.structure.StructureMappingcommandSet;
-import jalview.structure.StructureSelectionManager;
+import jalview.structures.models.AAStructureBindingModel;
public interface JalviewStructureDisplayI
{
public interface JalviewStructureDisplayI
{
- SequenceStructureBinding getBinding();
+ AAStructureBindingModel getBinding();
/**
* @return true if there is an active GUI handling a structure display
/**
* @return true if there is an active GUI handling a structure display
@@
-56,11
+48,16
@@
public interface JalviewStructureDisplayI
void dispose();
/**
void dispose();
/**
- * shutdown any structure viewing processes started by this display
+ * Shutdown any Jalview structure viewing processes started by this display
+ *
+ * @param closeExternalViewer
+ * if true, force close any linked external viewer process
*/
*/
- void closeViewer();
+ void closeViewer(boolean closeExternalViewer);
+
/**
* apply a colourscheme to the structures in the viewer
/**
* apply a colourscheme to the structures in the viewer
+ *
* @param colourScheme
*/
void setJalviewColourScheme(ColourSchemeI colourScheme);
* @param colourScheme
*/
void setJalviewColourScheme(ColourSchemeI colourScheme);