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added mechanism to initiate DAS feature fetching programmatically from jalview.bin...
[jalview.git]
/
src
/
jalview
/
appletgui
/
APopupMenu.java
diff --git
a/src/jalview/appletgui/APopupMenu.java
b/src/jalview/appletgui/APopupMenu.java
index
072621b
..
803f323
100755
(executable)
--- a/
src/jalview/appletgui/APopupMenu.java
+++ b/
src/jalview/appletgui/APopupMenu.java
@@
-307,7
+307,7
@@
public class APopupMenu
"Group Description",
\r
ap.alignFrame,
\r
"Edit Group Name / Description",
\r
"Group Description",
\r
ap.alignFrame,
\r
"Edit Group Name / Description",
\r
- 500,100);
\r
+ 500,100, true);
\r
\r
if (dialog.accept)
\r
{
\r
\r
if (dialog.accept)
\r
{
\r
@@
-342,13
+342,13
@@
public class APopupMenu
\r
ap.alignFrame,
\r
"Edit Sequence",
\r
\r
ap.alignFrame,
\r
"Edit Sequence",
\r
- 500, 100);
\r
+ 500, 100, true);
\r
\r
if (dialog.accept)
\r
{
\r
EditCommand editCommand = new EditCommand(
\r
"Edit Sequences", EditCommand.REPLACE,
\r
\r
if (dialog.accept)
\r
{
\r
EditCommand editCommand = new EditCommand(
\r
"Edit Sequences", EditCommand.REPLACE,
\r
- dialog.getName(),
\r
+ dialog.getName().replace(' ', ap.av.getGapCharacter()),
\r
sg.getSequencesAsArray(ap.av.hiddenRepSequences),
\r
sg.getStartRes(), sg.getEndRes()+1, ap.av.alignment
\r
);
\r
sg.getSequencesAsArray(ap.av.hiddenRepSequences),
\r
sg.getStartRes(), sg.getEndRes()+1, ap.av.alignment
\r
);
\r
@@
-499,7
+499,7
@@
public class APopupMenu
"Sequence Description",
\r
ap.alignFrame,
\r
"Edit Sequence Name / Description",
\r
"Sequence Description",
\r
ap.alignFrame,
\r
"Edit Sequence Name / Description",
\r
- 500,100);
\r
+ 500,100, true);
\r
\r
if (dialog.accept)
\r
{
\r
\r
if (dialog.accept)
\r
{
\r
@@
-517,14
+517,14
@@
public class APopupMenu
\r
if ( ap.av.applet.jmolAvailable )
\r
new jalview.appletgui.AppletJmol(entry,
\r
\r
if ( ap.av.applet.jmolAvailable )
\r
new jalview.appletgui.AppletJmol(entry,
\r
- new Sequence[]
\r
- {seq},
\r
+ new Sequence[]{seq},
\r
+ null,
\r
ap,
\r
AppletFormatAdapter.URL);
\r
else
\r
new MCview.AppletPDBViewer(entry,
\r
ap,
\r
AppletFormatAdapter.URL);
\r
else
\r
new MCview.AppletPDBViewer(entry,
\r
- new Sequence[]
\r
- {seq},
\r
+ new Sequence[]{seq},
\r
+ null,
\r
ap,
\r
AppletFormatAdapter.URL);
\r
\r
ap,
\r
AppletFormatAdapter.URL);
\r
\r