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Use i, not index if not representedSeqs
[jalview.git]
/
src
/
jalview
/
appletgui
/
APopupMenu.java
diff --git
a/src/jalview/appletgui/APopupMenu.java
b/src/jalview/appletgui/APopupMenu.java
index
76fec4f
..
b3c8f20
100755
(executable)
--- a/
src/jalview/appletgui/APopupMenu.java
+++ b/
src/jalview/appletgui/APopupMenu.java
@@
-197,7
+197,7
@@
public class APopupMenu
helixColour_actionPerformed();
\r
else if(source==strandColour)
\r
strandColour_actionPerformed();
\r
helixColour_actionPerformed();
\r
else if(source==strandColour)
\r
strandColour_actionPerformed();
\r
- else if(source==clustalColour)
\r
+ else if(source==turnColour)
\r
turnColour_actionPerformed();
\r
else if(source==buriedColour)
\r
buriedColour_actionPerformed();
\r
turnColour_actionPerformed();
\r
else if(source==buriedColour)
\r
buriedColour_actionPerformed();
\r
@@
-630,19
+630,18
@@
public class APopupMenu
hseqs = new SequenceI[ representGroup ? gsize-1 : gsize ];
\r
\r
int index = 0;
\r
hseqs = new SequenceI[ representGroup ? gsize-1 : gsize ];
\r
\r
int index = 0;
\r
- while(index < gsize)
\r
+ for(int i=0; i<gsize; i++)
\r
{
\r
{
\r
- if(representGroup && sg.getSequenceAt(index)!=seq)
\r
+ if(representGroup && sg.getSequenceAt(i)!=seq)
\r
{
\r
{
\r
- seq.addHiddenSequence(sg.getSequenceAt(index));
\r
- hseqs[index] = sg.getSequenceAt(index);
\r
+ seq.addHiddenSequence(sg.getSequenceAt(i));
\r
+ hseqs[index++] = sg.getSequenceAt(i);
\r
}
\r
else if(!representGroup)
\r
{
\r
}
\r
else if(!representGroup)
\r
{
\r
- hseqs[index] = sg.getSequenceAt(index);
\r
+ hseqs[index++] = sg.getSequenceAt(i);
\r
+ }
\r
}
\r
}
\r
- index ++;
\r
- }
\r
\r
ap.av.hideSequence(hseqs);
\r
\r
\r
ap.av.hideSequence(hseqs);
\r
\r