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JAL-629 example files from nf-core
[jalview.git]
/
src
/
jalview
/
appletgui
/
APopupMenu.java
diff --git
a/src/jalview/appletgui/APopupMenu.java
b/src/jalview/appletgui/APopupMenu.java
index
e1bfbde
..
b860a36
100644
(file)
--- a/
src/jalview/appletgui/APopupMenu.java
+++ b/
src/jalview/appletgui/APopupMenu.java
@@
-835,8
+835,8
@@
public class APopupMenu extends java.awt.PopupMenu
if (start <= end)
{
seqs.add(sg.getSequenceAt(i));
if (start <= end)
{
seqs.add(sg.getSequenceAt(i));
- features.add(new SequenceFeature(null, null, start, end,
- "Jalview"));
+ features.add(
+ new SequenceFeature(null, null, start, end, "Jalview"));
}
}
}
}
@@
-945,8
+945,8
@@
public class APopupMenu extends java.awt.PopupMenu
}
else
{
}
else
{
- new mc_view.AppletPDBViewer(entry, new SequenceI[] { seq }, null, ap,
- DataSourceType.URL);
+ new mc_view.AppletPDBViewer(entry, new SequenceI[] { seq }, null,
+ ap, DataSourceType.URL);
}
}
}
}
@@
-1056,7
+1056,7
@@
public class APopupMenu extends java.awt.PopupMenu
BLOSUM62Colour.setName(JalviewColourScheme.Blosum62.toString());
BLOSUM62Colour.addItemListener(this);
PIDColour.setLabel(
BLOSUM62Colour.setName(JalviewColourScheme.Blosum62.toString());
BLOSUM62Colour.addItemListener(this);
PIDColour.setLabel(
- MessageManager.getString("label.colourScheme_%_identity"));
+ MessageManager.getString("label.colourScheme_%identity"));
PIDColour.setName(JalviewColourScheme.PID.toString());
PIDColour.addItemListener(this);
zappoColour
PIDColour.setName(JalviewColourScheme.PID.toString());
PIDColour.addItemListener(this);
zappoColour
@@
-1072,20
+1072,20
@@
public class APopupMenu extends java.awt.PopupMenu
hydrophobicityColour
.setName(JalviewColourScheme.Hydrophobic.toString());
hydrophobicityColour.addItemListener(this);
hydrophobicityColour
.setName(JalviewColourScheme.Hydrophobic.toString());
hydrophobicityColour.addItemListener(this);
- helixColour.setLabel(MessageManager
- .getString("label.colourScheme_helix_propensity"));
+ helixColour.setLabel(
+ MessageManager.getString("label.colourScheme_helixpropensity"));
helixColour.setName(JalviewColourScheme.Helix.toString());
helixColour.addItemListener(this);
strandColour.setLabel(MessageManager
helixColour.setName(JalviewColourScheme.Helix.toString());
helixColour.addItemListener(this);
strandColour.setLabel(MessageManager
- .getString("label.colourScheme_strand_propensity"));
+ .getString("label.colourScheme_strandpropensity"));
strandColour.setName(JalviewColourScheme.Strand.toString());
strandColour.addItemListener(this);
turnColour.setLabel(
strandColour.setName(JalviewColourScheme.Strand.toString());
strandColour.addItemListener(this);
turnColour.setLabel(
- MessageManager.getString("label.colourScheme_turn_propensity"));
+ MessageManager.getString("label.colourScheme_turnpropensity"));
turnColour.setName(JalviewColourScheme.Turn.toString());
turnColour.addItemListener(this);
buriedColour.setLabel(
turnColour.setName(JalviewColourScheme.Turn.toString());
turnColour.addItemListener(this);
buriedColour.setLabel(
- MessageManager.getString("label.colourScheme_buried_index"));
+ MessageManager.getString("label.colourScheme_buriedindex"));
buriedColour.setName(JalviewColourScheme.Buried.toString());
buriedColour.addItemListener(this);
nucleotideColour.setLabel(
buriedColour.setName(JalviewColourScheme.Buried.toString());
buriedColour.addItemListener(this);
nucleotideColour.setLabel(