+ public void itemStateChanged(ItemEvent evt)\r
+ {\r
+ if(evt.getSource()==abovePIDColour)\r
+ abovePIDColour_itemStateChanged();\r
+ else if(evt.getSource()==showColourText)\r
+ showColourText_itemStateChanged();\r
+ else if(evt.getSource()==showText)\r
+ showText_itemStateChanged();\r
+ else if(evt.getSource()==showBoxes)\r
+ showBoxes_itemStateChanged() ;\r
+ }\r
+\r
+ public void actionPerformed(ActionEvent evt)\r
+ {\r
+ Object source = evt.getSource();\r
+ if(source==clustalColour)\r
+ clustalColour_actionPerformed();\r
+ else if(source==zappoColour)\r
+ zappoColour_actionPerformed();\r
+ else if(source==taylorColour)\r
+ taylorColour_actionPerformed();\r
+ else if(source==hydrophobicityColour)\r
+ hydrophobicityColour_actionPerformed();\r
+ else if(source==helixColour)\r
+ helixColour_actionPerformed();\r
+ else if(source==strandColour)\r
+ strandColour_actionPerformed();\r
+ else if(source==turnColour)\r
+ turnColour_actionPerformed();\r
+ else if(source==buriedColour)\r
+ buriedColour_actionPerformed();\r
+ else if(source==nucleotideMenuItem)\r
+ nucleotideMenuItem_actionPerformed();\r
+\r
+ else if (source == userDefinedColour)\r
+ userDefinedColour_actionPerformed();\r
+ else if (source == PIDColour)\r
+ PIDColour_actionPerformed();\r
+ else if (source == BLOSUM62Colour)\r
+ BLOSUM62Colour_actionPerformed();\r
+ else if (source == noColourmenuItem)\r
+ noColourmenuItem_actionPerformed();\r
+ else if (source == conservationMenuItem)\r
+ conservationMenuItem_itemStateChanged();\r
+ else if (source == unGroupMenuItem)\r
+ unGroupMenuItem_actionPerformed();\r
+\r
+ else if(source == pdb)\r
+ addPDB();\r
+ else if(source == hideSeqs)\r
+ hideSequences(false);\r
+ else if(source == repGroup)\r
+ hideSequences(true);\r
+ else if(source == revealAll)\r